Code: E374013 Simulation of Biological Systems
Lecturer: Ing. Vladimír Hlaváč Ph.D. Weekly load: 2P+2C Completion: A, EX
Department: 12110 Credits: 5 Semester: W
Description:
Modelling of biological dynamic systems, from single unit to population. Biological and artificial neuron, catastrophe theory, compartment models. Basic numerical description of dynamic systems and its solution in Matlab.
Subject web pages: http://iat.fs.cvut.cz/sbs
Contents:
Artificial/biological neuron
biological neuron description
artificial neuron network, perceptron, MLP, back propagation
other types (radial based, Hopfield network, model of memory)
homeostatic neural network
Artificial live
The "live game" simulation
Cellular automata
Swarm intelligence
Artificial ants (vant-s)
Population simulation - single population, dual (hare-wolf), three population (+vegetation grow)
Modeling of process
differential equation for dynamic description
compartment method
deterministic chaos, Lorentz attractor
catastrophic theory, examples of use
Identification
using known model, guessing parameters (gradient descent)
using feed forward neural network
using swarm/genetic algorithm
data analysis (correlation, autocorrelation, Fourier transform)
Seminar contents:
Most of problems trained using Matlab, or with a single-purpose programs. Important part of students' work is preparing a presentation and a report about one or two problems from the range of the subject.
Recommended literature:
Subject web page: http://iat.fs.cvut.cz/sbs/

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